Publications


2017​

Jong Ghut Ashley Aw, Yang Shen, Niranjan Nagarajan, Yue Wan (2017) Mapping RNA-RNA interactions globally using biotinylated psoralen.  J Vis Exp. 2017 May 24;(123).


2016

Minh N. Nguyen, Adelene Y. L. Sim, Yue Wan, M. S. Madhusudhan and Chandra Verma (2016) Topology independent comparison of RNA 3D structures using the CLICK algorithm. Nucleic Acids Research, doi: 10.1093/nar/gkw819

Jong Ghut Ashley Aw1*, Andreas Wilm2*, Miao Sun2*, Yang Shen2, Xin Ni Lim1, Kum-Loong Boon1, Yun-Shen Chan3, Tong Zhang4, Sidika Tapsin1, Teodorus Theo Susanto1, Niranjan Nagarajan2Ɨ, Yue Wan1Ɨ (2016) In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation. Molecular Cell . 2016 May 19;62(4):603-17

Huibin Zhang , Teodorus T Susanto , Yue Wan , Swaine L. Chen (2016) Comprehensive mutagenesis of fimS reveals novel regulation of Type 1 pili in uropathogenic Escherichia coli. PNAS,  2016 Apr 12;113(15):4182-7. 


2013 and before


Yue Wan*ᶧ, Kun Qu*, Qiangfeng Cliff Zhang, Ohad Manor, Zhenqgqing Ouyang, Jiajing Zhang, Michael P. Snyder, Eran Segal and Howard Y. Changᵼ. (2013) Landscape and variation of RNA secondary structure across the human transcriptome. Nature 2014 Jan 30;505(7485):706-9.  *These authors contributed equally. ᶧ Co-corresponding authors.

Ibrahim AvsarIIik, Jeffrey J Quinn, Plamen Georgiev, Filipe Tavares-Cadete, Daniel Maticzka, Sarah Toscano, Yue Wan, Robert C. Spitale, Nicholar Luscombe, Rolf Backofen, Howard Y. Chang and Asifa Akhtar. (2013)Tandem Stem-Loops in roX RNAs Act Together to Mediate X Chromosome Dosage Compensation in Drosophila. Molecular Cell 2013 Jul 25;51(2):156-73.

Yue Wan, Kun Qu, Zhengqing Ouyang and Howard Y. Chang. (2013) Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing. Nature Protocols, 2013 May;8(5):849-69. 

Man Zhang, Lili Li, Zhongfeng Wang, Huijuan Liu, Junlin Hou, Min Zhang, Aijun Hao, Yun Liu, Guang He, Yongyong Shi, Lin He, Xueying Wang, Yue Wan* and Baojie Li* (2012). A role for c-Abl in cell senescence and spontaneous immortalization. AGE10.1007/s11357-012-9452-4.  *corresponding author


Yue Wan, Kun Qu, Michael Kertesz, Zhengqing Ouyang, Jun Li, Robert Tibshirani, Robert C. Nutter, Eran Segal, Howard Y. Chang. (2012) Genome-wide measurement of RNA folding energies. Molecular Cell 48(2):169-81. 

Yue Wan, Michael Kertesz, Robert C. Spitale, Eran Segal and Howard Chang. (2011) Understanding the transcriptome through RNA structure. Nature Reviews Genetics12(9):641-55.

Yue Wan and Howard Chang. (2010) HOTAIR: Flight of noncoding RNAs in cancer metastasis.  Cell Cycle 9(17):3391-2

Michael Kertesz*, Yue Wan*, Elad Mazor, John L. Rinn, Robert C. Nutter, Howard Y. Chang, Eran Segal. (2010) Genome-wide Measurement of RNA Secondary Structure in Yeast.  Nature467(7311):103-7.   * these authors contributed equally. 


Miao-Chih Tsai, Ohad Manor, Yue Wan, Nima Mosammaparast, Jordan K. Wong, Fei Lan, Yang Shi, Eran Segal, Howard Y. Chang. (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329(5992):689-93. 



Wan Lab of RNA Structure Genomics

Genome Institute of Singapore